The resulting model is largely mechanistic, with most terms being derived from theory or including coefficients that have a theoretical basis, but includes empirical parameters to deal with the changing performance.
Most terms are associated with relatively few contigs, 18.4 on average, and only a handful of terms are widespread throughout the transcriptome.
Naturally, those assumptions can be discussed critically as most terms are not as clearly delineated as would be desirable for the construction of a definition.
Most terms are by default used as "flat" enumeration types, i.e. with the meaning only given by their name and description.
Strikingly, the most enriched terms were all involved in RNA processing, with mRNA export as the most enriched term (Fig. 3d).
The lists show that by then most technical terms were Russian and that Greek terms had begun to disappear.
The most abundant terms were for 'protein amino acid phosphorylation', representing 56 genes.
The perturbation expansions did not converge to a finite sum and even most individual terms were divergent.
The most common terms were pax (30%), jecs (25%), fainites (20%) and cross keys (2%).
The five most frequent terms were "other biological processes," "developmental processes," "other metabolic processes," "protein metabolism," and "other cellular processes".
