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Three proteins (CD4, CXADR, and HAVCR2) were selected as the most similar structures to the HAVCR1 IgV-like domain.
Among various subclasses of POPs, PCBs are the subclass that has most similar structures to BFRs (5).
The value of Tanimoto coefficient is between 1.0 and 0, with 1.0 being the most similar structures and 0 being completely different structures.
The output of similarity search is arranged in descending order with the top hits representing the most similar structures relative to the query molecule.
We now define a score that allows the method to sort the most similar structures in a database to a query structure.
Upon import, the sequences from SMART/PFAM alignments with more than 75% identity with known structures were substituted by the most similar structures from the Protein Data Bank [ 15].
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For each sequence segment, the most similar structure in terms of RMSD from the structural candidate list is calculated.
Not surprisingly, CMG2 is the most similar structure to TEM8, according to the 3D structure similarity search engine DALI [28].
d The structure alignment of NRPS between the first I-TASSER model and the top 5 most similar structure templates in PDB. e The predicted ligand-binding sites of the NRPS protein.
Here, we report a hydrothermal reduction of CO2/NaHCO3 by using biomass-derivative hexanehexol, which has the most similar structure to carbohydrate biomass, as a preliminary work for CO2 reduction with real biomass.
Among the cluster members, the most similar structure to Prod1 is CD59 with a PPM score of 62.98.
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