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The fact that all repeats from the Cayman phylotype were identical with most repeats from the Tiscar phylotype at the amino acid level was not apparent in the nucleotide phylogeny, suggesting strong purifying selection on a common amino acid sequence.
The right side of the tree shows long branches leading to the repeats that are located inside one structurally complete copy of Tetris from D. virilis and to most repeats from D. americana.
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Most repeat family reads from the non-pathogenic isolate are from non-LTR retrotransposons, similar to the Tad1 element of Blumeria graminis, others are in novel, previously undescribed elements.
Most repeat databases contain repeat libraries from a single to a few genome assembly projects (e.g. [ 6– 8], http://maizetedb.org), or can span the whole spectrum of organisms (http://www.girinst.org).org
The most common repeat from the ESTs was the trinucleotide repeat CCG which comprised 36% of all EST-derived SSRs and the most common repeat from the BES was the dinucleotide repeat GA which comprised 40% of all BES-derived repeats.
Whole genome shotgun sequencing has also been employed to identify and analyze the most abundant tandem repeats from diverse animal and plant species [14].
Moving patients repeatedly is an example of covert ageism: The patients who suffer most from repeated moves are very old very vulnerable people.
Note that most of the de novo detected repeats from our survey, including the SB92 and STR120 satellites (present in the GenBank nucleotide (nt) database) and many retrotransposons described in Additional File 1 (many of which are not present in nt), were not present in the TIGR database.
Sequencing of highly repetitive Cot clones indicates that most Taxodium repeats are highly diverged from previously characterized plant repeat sequences.
CRISPRs differ from most other repeats described here in that these small sequences are part of a complex genetic arrangement.
But for the repeats longer than read length, most of them performed poorly in completeness and accuracy of assembling repeats from NGS data.
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