Sentence examples for most related sequence from inspiring English sources

Similarity-based methods generally use BLAST based searches to find the most related sequence [ 1, 8, 9].

To make the sequence set most representative and informative in terms of phylogeny, the most related sequences were first removed from the dataset with all pairwise distance scan.

For new sequences added, pairwise distance scan was carried out again to exclude the most related sequences and the final dataset contained 322 sequences with genotype tag as A-H and Chimpanzee.

The phylogenetic tree showed Lac1 and Lac4 as the most related sequences among the four Lepthosphaerulina sp proteins.

We used the DAYSLEEPER sequence as a query to find the most related sequences in the genomes of Arabidopsis, grapevine and rice and produced a maximum-likelihood phylogenetic tree with bootstrap values, depicted in Figure 1, to reveal the relationship between the highest scoring BLAST hits in the Arabidopsis, grapevine and rice genomes.

This yields (within seconds) the most related protein sequence (either E. coli, S. aureus, R. norvegicus, D. melanogaster, or H. sapiens, B. taurus), determines the involved GO-terms, analyses the type of modules (biological classification first) involved and delivers a pie chart according to the process types implicated by this protein according to the knowledge from these model organisms.

The most closely related sequence was from a measles virus isolate, MVi/WA.AUS/12.01 (GenBank accession no. AF481492), previously designated as genotype D7, which had been imported from Myanmar into Australia in 2001 (15 ).

AtPNP-A, its most closely related sequence AtPNP-B, and orthologues in other higher plant species, share a family-45 glucosidase domain with the cell wall loosening expansins [ 11] and are related to expansins on the basis of this structural homology [ 9, 12].

The identities and phylogenetic distances of the selected and most related ITS sequences showed nematode larvae investigated in this study are closely related to C. multipapillatum and likely are of different sub-species.

We added each study sequence to the appropriate alignment, in some cases along with the 5 most closely related sequences found in the HIVDB.

Sequence analysis revealed isolate AR131 is most related to E. faecalis (99.7%% sequence homology to KF193427.1, new accession number submitted KP824986).