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In the most recent assembly term, petitions of concern were used 18 times, compared with just six in 2007/2008, the year devolution was restored.
These short reads were mapped using the Bowtie software and pre-built indexes for the most recent assembly of the C. elegans genome [71].
In the most recent assembly (October, 2009), we found evidence for five partial DIA1L genes (Table S10), in addition to the 3 full-length amphioxus DIA1L homologues.
Additionally, the sequence of the most recent assembly (12/27/05) of the genome sequence was also obtained [ 35].
In this study, we use the most recent assembly of the bovine genome (UMD3.1 [ 16]) to re-examine the genomic sequence of the TRA/TRD locus.
By comparison, the most recent assembly of the reference C. elegans N2 genome (WBcel215) has a golden path length of 100,286,070 bp.
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Using the results of BLAST-search we extracted orthologous gene sequences from the most recent assemblies of primate genomes and made multiple alignment using ClustalW algorithm [ 16].
Nevertheless, with the exception of the size of the "gap" between the two sub-loci, the organization and sequence of the bovine Type I IFN have remained relatively constant through the most recent assemblies.
To determine the evolutionary history of hominids comprehensively based on whole genomes, we inferred τ and θ using whole-genome alignments consisting of the most recent assemblies of the human, chimpanzee, gorilla, and orangutan genomes.
The most recent assemblies for the zebrafish genome (Zv7, July 2007) and medaka (MEDAKA1, October 2005) were the subjects of query searches using the various type I, SSR, EST, and BAC end sequences from the salmonids.
The effect of this procedure is to ensure that dbSNP variation data in Ensembl is mapped to the most recent genome assembly supported by Ensembl, even if the assembly is not yet supported by dbSNP.
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