Sentence examples for most probable tree from inspiring English sources

In contrast, the second most probable tree had a log probability of −2814.34.

According to this criterion, the most probable tree topology yielded a log probability of −2289.62.

The most probable tree found in the MCMC simulation has a mere 0.08 probability and 136 trees are necessary to obtain a cumulative probability of 0.90.

Based on the theory of ML methods, the likelihood of a series of residue substitution events is estimated and, then, the most probable tree topology from all possible ones that represents the evolutionary history of a given sequence set can be inferred.

Figure 3 presents the a posteriori most probable tree relating these sequences.

Finally, Bayesian inference identifies the most probable tree given the data and a pre-determined evolutionary model.

We use Bayesian phylogenetic methods and a Markov chain Monte Carlo algorithm is used to obtain the most probable trees and posterior probabilities of clades.

P-values of top 10 trees generated from PhyML are indicated and the most probable trees in the analyses were used to generate Additional file 6 : Figure S1.

Multiple trees (100 trees for a and b, 40 trees for c) were generated by boot-strapping in PhyML analysis, and most probable trees were selected by a combination of 9 statistical methods implemented in CONSEL [ 40 ].

Bootstrappings implemented in PhyML was used to generate multiple trees (100 trees for SNP concatemers) for choosing most probable trees based on combination of 9 statistical analyses using CONSEL [ 40].

The approximately unbiased (AU) test, intended to test the relative likelihood of various forms of trees based on support levels of individual sites, involved use of the CONSEL program (Shimodaira and Hasegawa 2001), with the output of Protml in MOLPHY v2.3beta (Adachi and Hasegawa 1996), based on the 19 most probable trees for 20 representative taxa.