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Within continents, most population comparisons do not yield large differentiation estimates (Table S1, Table S2, Table S3).
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The global Fst value for this SNP lies within the top 5% of the empirical distribution and most population pairwise comparisons between Africans and non-Africans are highly significant.
For example, in Denmark, most population pair-wise comparisons within a year were significant, however in 2010, DKV and DKH have non-significant pair-wise FST.
Although LD extends over long distances in most livestock populations, comparisons of LD patterns between populations show that shared haplotype segments are much shorter when the population consists of multiple purebred populations [ 13- 15]; this indicates that LD decays more quickly in multi-breed or crossbred populations than in purebred populations.
In some cases these population comparisons are not the most geographically proximate, for example LagBch is much closer geographically to the other populations in the Palos Verdes region (34 km) rather than Point Loma populations (107 km).
Though most of these identified regions were found in both marine-freshwater population comparisons, some of them were found in only one of the two pairs.
Overestimates weight in most populations.
Most populations appear highly differentiated (Table 4).
Most of the significant F IS locus-population comparisons involved Guinea samples of different years versus other Atlantic populations, being deviations attributed to homozygote excess.
We selected the US as the most appropriate comparison population for the overall CMF analyses and we used it as the comparison population for the exposure subgroup analyses for consistency.
Most pairwise comparisons of ΦST among populations within each clade, however, were not significant.
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