Sentence examples for most popular alignment from inspiring English sources

Although CLUSTALW is still the most popular alignment tool to date, recent methods offer significantly better alignment quality and, in some cases, reduced computational cost.

Some of the most popular alignment programs used for RNA-seq include Bowtie/TopHat [ 25], BWA [ 28], and STAR [ 29].

We analyse the problem of parallel alignment and review the parallelisation strategies of the most popular alignment tools, which can all be abstracted to a single parallel paradigm.

In this paper, we analysed the problem of sequence alignment from parallel computing perspective; we reviewed the design of three of the most popular alignment tools exhibiting parallel computing capabilities, among others, Bowtie2, BWA, and BLASR.

We analyse the problem of parallel alignment and review the parallelisation strategies of some of the most popular alignment tools (such as Bowtie and BWA), which can all be abstracted by the farm paradigm (a.k.a. master-worker or task- farm) [ 1, 2].

The most popular progressive alignment method has been the Clustal family, especially the weighted variant ClustalW to which access is provided by a large number of web portals including GenomeNet, EBI, and EMBNet.

BM-Map takes SAM format (Sequence Alignment/Map) [ 16], the most popular read alignment format, as the standard input.

BM-Map takes SAM (Sequence Alignment/Map), the most popular read alignment format, as the standard input; then based on the Bayesian model, it calculates mapping probabilities of multireads for competing genomic loci; and BM-Map generates the output by adding mapping probabilities to the original SAM file so that users can easily perform downstream analyses.

As a matter of fact, all the most popular parallel alignment tools, including Bowtie2, BWA, and BLASR, implement a master-worker paradigm, where each worker cycles over the following three steps: gets a sequence to align from the shared input file; aligns the read against the genome loaded into the shared index file; populates shared data structures with results and statistics.

Progressive multiple sequence alignment is one of the most popular multiple sequence alignment techniques, in which the pair-wise symbol matching scores can be derived from any scoring scheme or obtained from a substitution scoring matrix such as PAM [ 3] or BLOSUM [ 4].

STAR is the latest and most popular RNA-seq alignment tools.