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The final question is whether it is at all possible to gain any performance benefits with KDWP (even with the most optimized implementation) compared to AES encryption.
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Note that even in the most optimized implementations this will not be achievable as AES has much more faster local data access, compared to the KDWP.
The performance is 40 times faster than the most optimized SW implementation on a small CPU in literature.
Our Gapped BLAST implementation on an NVIDIA Geforce 8800 GTX GPU is up to 2.7x quicker than the most optimized CPU-based implementation, namely NCBI BLAST, running on a Pentium4 3.4 GHz desktop computer with 2GB RAM.
Table 2 reports the throughput, in terms of frames per second, of the complete McGM implementation, considering only the most optimized version of each stage.
Figure 5 Comparison with an optimized implementation.
This paper details an optimized implementation of the NCC algorithm.
In this paper, we propose an optimized implementation of GSS.
An optimized implementation should be able to generate SI faster, in all cases.
Using the optimized implementation, the global processing time was reduced by a factor equal to 4.7.
Moreover, using an optimized implementation and a compiled language could significantly reduce the processing time.
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