Your English writing platform
Discover LudwigExact(19)
First, seeds are extended in two directions to seek a complete read match tolerating at most one mismatch.
We allowed at most one mismatch between each of the primer sequences and the homologous A. thaliana sequences.
The reads were then mapped to the mm9 genome using bowtie allowing at most one mismatch in every alignment.
Sequences homologous (with at most one mismatch) to known tRNA/rRNA/ncRNA sequences collected from the NCBI GenBank database were classified as tRNAs/rRNAs/ncRNAs.
A total of 20.6 million sequencing reads could be mapped to the human genome with at most one mismatch (Supporting Information Table S1).
73006924 sequenced and extracted tags were mapped to the mouse genome (mm9) using Nexalign (described in [ 100]) allowing for at most one mismatch.
Similar(41)
There were fewest similarly ranked motifs within families and orders when two mismatches were allowed, and most when one mismatch was allowed.
The consensus sequence for each window was defined as the 15-nt sequence that was found most frequently within one mismatch among strains.
All the short reads from each of the samples were then clustered into tag reads on the basis of sequence similarity (allowing one mismatch at most between any two reads within each tag read cluster, with clusters having <2 or >100 reads discarded).
To this end, we use BWA with one mismatch at most per aligned read, which means that we only allow for a single T C mutation.
Tag Find scans nucleotide windows with length ranging from 11 to 13 nucleotides, starting from the 5′ end of each read, allowing at most one variation (deletion, insertion or mismatch) in the tag sequence.
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com