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The high bootstrap values of most nodes indicate the robustness of the tree computed.
The similar pattern observed in trees generated by various methods and good bootstrap values at most nodes indicate the reliability of the current representation of phylogenetic relationship among XPA proteins.
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The phylogenetic trees produced from concatenated rRNA and protein coding genes have high support values in most nodes, indicating that the mitochondrial genome sequences are promising markers for resolving the phylogenetic issues of ardeid birds when more taxa are added.
Thus, the absolute position of the node on the plot has no meaning, only its relative position versus other nodes: the most closely crowded nodes indicate genes with the highest co-expression.
The numbers at the nodes indicate RaxML bootstrap values (only values >50% are shown).
Edges between nodes indicate a statistically significant weighted pairwise similarity between the protein profiles of each node (see Methods) with similarity scores ≥1.
The gray nodes indicate seed nodes and the others are nodes that interact with seed nodes.
Numbers at nodes indicate bootstrap support.
The degree distribution of drug nodes indicates that most drugs acting on more than one target, and the average number of target proteins per drug is 2.8.
The most common site of metastatic disease in melanoma is the regional lymph nodes indicating that metastatic spread usually occurs via the lymphatic system.
The most striking feature of the network is the participation of primary nodes in interactions with at minimum two other nodes – indicating that this network is significantly more connected through microRNAs than one would expect by chance alone (p<0.01).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com