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Our results point towards CSN2 and CSN1S2 as the most likely loci harbouring the underlying causative DNA variation.
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In the case of "stochastic error" it may have been that the probe set used for Anchored Hybrid Enrichment most likely captured loci sharing similar attributes.
Null allele analysis indicated that the heterozygote deficiencies are most likely in loci BCY01 and BCY02 for the Barra do Garças and Araguaiana populations, BCY07 for the Araguaiana population, and BCY11 for the Bom Jardim population.
Thus LdhA is most likely the locus that is scored in allozyme analyses.
Individual post-hoc analysis for each of these markers may identify the most likely multi-locus combination involving those marker.
PCR analysis of the tyrosinase gene (the most likely candidate locus) failed to amplify exons 1 and 2 from albino mouse DNA.
The availability of the complete sequence of the ovine TRG loci allowed us to attempt a reconstruction of the succession of events that shaped their current genomic organization starting from the most likely ancestral locus, and led to the rapid expansion of their copy number.
The fact that only a minority of surveyed loci revealed deviations from HWE indicates that the investigated population overall is in Hardy-Weinberg equilibrium, and that deviations at individual loci are most likely due to locus-specific effects, and not due to biological factors such as inbreeding or genetic drift, which would affect all loci.
By evaluating models of both neutrality and selection, it is possible to construct likelihood ratio tests consisting of 0 to n − 1 selected loci to determine the most likely number of loci under selection.
Although the number of Mhc class I loci in great tit was unknown and most likely exceeded 4 loci, we used the program 'Negative Multinomial' to estimate the minimum number of sequences required per individual for reliable genotyping and calculated the number of sequences that are necessary for amplifying all the variants at least twice (r = 2), giving a confidence level (f) of 0.95 [ 28].
A loci order at multipoint LOD 3 and the most likely order of loci were determined within each of these two groups.
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