Sentence examples for most likely alignment from inspiring English sources

Two summary reports were created once the most likely alignment for each read was identified by BFAST.

Beside clearly aligned paired-end reads, ambiguously aligned paired-end reads (see e.g. Fullwood et al., 2009; Hall and Quinlan, 2012; Maher et al., 2009 for details on these concepts) are also considered and the most likely alignment position of such reads is calculated.

This approach provided a unique most likely orthologous alignment for 44,493 turkey BACs along the framework chicken sequence (Additional file 2: Table S2).

This allowed the identification (and removal) of markers that are most likely featuring alignments from different loci in the genome.

To circumvent this problem, we made the assumption that the most likely multiple sequence alignment in the neighborhood is the one that locally maximizes the cumulative score for the alignment.

This change in ocular alignment most likely resulted from the decrease in the opening angle of the orbits between the two lateral walls caused by the surgical procedures.

Regions not included in the alignment most likely represent regions not sequenced in one or more genomes, deletions/insertions, or genome fragments replaced by a non-homologous sequence (i.e., within the comK prophage).

The unusual genetic length (Table 1 and Table 2) and larger gaps on the genetic map of chromosome 13 are consistent with map inflation resulting from incorrect marker order, most likely due to inappropriate alignment of our illumina reads onto the reference genome.

Regions with more than three haplotypes were ignored as they most likely contained additional sequence alignments from paralogous genes.

Because long-sequence aligners (e.g. BLAT [ 29]) are designed to generate collinear alignments, determining which alignment result(s) most likely represent the true genomic source(s) of the transcript that produced a given contig is non-trivial.

In practice, users will most likely use a more sophisticated alignment method, such as FUGUE (Shi et al., 2001), yielding somewhat better accuracies.