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While most genotypes were detected only once, five (7%) were sampled multiple times.
Most genotypes were homozygous (400,328 = 98.6%) with only a small fraction showing residual heterozygocity (1,961 = 0.5%) or no amplification (3,533 = 0.9%).
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For the IG parents, rhizome expression was variable and penetrance of most genotypes was incomplete, but genotypes that demonstrated the potential for moderate rhizome expression had high penetrance (89% average).
Most genotypes are now divided into subgenotypes with distinct properties.
Most genotypes are viable and P n is close to 1.
The usual analysis strategy is to filter the data so that most genotypes are called with sufficient depth to minimalize these errors and missing data (e.g. [ 6]).
The most productive genotypes were generally the most homogeneous.
The 2 most prevalent genotype combinations were GII.P21_GII.3 and GII.P7_GII.6, and the 6 most common genotypes were GII.P4, GII.4, GII.6, GII.3, GII.P21, and GII.7.
In any case, only the most prevalent genotypes were represented by more than one individual.
In both cases, the most likely genotypes were used for prediction.
In this cohort of Brazilians patients with active CMV infection, the most frequent genotypes were gB1 and gB2 (74%).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com