Sentence examples for most gene trees from inspiring English sources
The p-value heatmap (Figure 3B) indicates that most gene trees showed divergent histories (depicted as groups of topologies with dissimilar p-value patterns) that are most likely due to horizontal gene transfer.
Support for the citrus 2 lineage was found in most gene trees when GCPSR criteria was applied.
In addition to the algal and bacterial affiliations, anomalous relationships among other taxa can be observed in most gene trees in our analyses, where multiple eukaryotic sequences sporadically branch with prokaryotic homologs.
We provide evidence that the evolutionary splits among primates, rodents and artiodactyls happened shortly after each other, with most gene trees favouring a topology with rodents as outgroup to primates and artiodactyls.
Because species monophyly was supported by most gene trees, a quantitative assessment of the number of interspecies lateral gene transfer (LGT) per gene could be performed using the species tree as a control (supplementary fig. S2, Supplementary Material online).
The two Lissotriton species are closely related; due to ongoing hybridization and incomplete lineage sorting, they share a large number of polymorphisms, and in most gene trees the species are not reciprocally monophyletic (Zieliński et al. 2013; Pabijan M, Zieliński P, Babik W, unpublished data).
As expected, most gene tree lineages show no insertion or deletion events.
TreeFix-DTL infers the most accurate gene trees: TreeFix-DTL offers consistent, high-quality performance, outperforming all other methods under most conditions and decreasing the error rate of RAxML trees by an average of 71.1%.
This suggests that most individual gene trees are topologically different from the concatenated gene tree.
Herniou obtained 32 different tree topologies by using 63 individual genes and one tree based on the combined alignment of the 63 genes, while the latter was consistent with most individual gene trees [ 12].
Like most gene tree/species tree methods, BCA assumes topologically homogeneous loci, that is, that all sites within a given locus evolved under the same underlying tree topology.
