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The recommendations are nothing more than the most frequent sequences found by the sequence mining algorithm, which in practice are the most common paths found in the workflows.
In particular, we developed a new graphical tool that permits discrimination between the most frequent sequences in the parasites.
The second main result is that, although the most frequent sequences are quite similar among species, there are some species-specific differences.
Numbers of low frequency single nt mismatch sequences for the 20 most frequent sequences in each sequencing cohort were tallied for each cutoff value.
The number of cytosines in the 7-bp tract varied from 6 to 13 and the most frequent sequences for the D310 region are C7TC6, C8TC6 and C9TC6.
The left and right 12 N SynE cores were extracted from the most frequent sequences of the chromatin immunoprecipitated samples to retrieve all the corresponding right and left 12 N cores coupled with them.
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We defined the typical repeat sequence as the most frequent sequence within a particular CRISPR locus.
Fig. 8D summarizes the results obtained with the ten most frequent sequence patterns.
In all these cases, the consensus sequence corresponds to the most frequent sequence within a particular CRISPR.
A consensus sequence (the most frequent sequence) for each conserved sequence in the alignments was generated for each of the 6 subgroups.
The two most frequent sequence patterns are HDWWW (16.4% of the 10,000 low-energy sequences, or 1640 sequences) and DLWWL (9.6% of the sequences).
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