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This relationship is confirmed by phylogenetic analysis with the N-terminal domain of sea bream CRTAC2 as the most divergent sequence.
The TrpC domain of H. pylori is the most divergent sequence within TCG-1.
Although ApoA-IVa has the most divergent sequence from ApoA-IVb.1, it is also highly induced by a high-fat feed.
The most divergent sequence (S. cerevisiae virus La (L-BC)) and the shortest sequence (C. parapsilosis) were culled for this analysis because we wanted to retain informative alignment positions when gapped sites are completely deleted.
The most divergent sequence stretches were found in regions corresponding to introns within A. thaliana (marked in white on the VISTA plot in Figure 2a), suggesting that the intron-exon structure of BB is well conserved.
The clustering of the isoenzymes according to their codon usage frequencies situated newly discovered isoenzymes with most divergent sequence and gene structure (HRP_3523, HRP_5508, HRP_22489, HRP_17517, HRP_23190) also furthest away from the previously known group C isoenzymes.
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In the absence of pairwise sequence divergences for a particular assemblage, we estimated these values by examining the two most divergent sequences as in Ochman et al. [32].
It is interesting that PNOC and POMC are the result of a local duplication because they are the most divergent sequences in the quartet of opioid peptide precursors.
The maximal nucleotide diversity (πMAX), defined as the number of nucleotide differences per site between the two most divergent sequences within the population, was also included (Table 1).
The two most divergent sequences in the entire data set (from S. aurea and S. invicta) differ at just 47 (2.1%) of their sites.
Most nucleotide sites (85%) are invariant across all Gp-9 sequences from the different Solenopsis species, and the two most divergent sequences (from S. aurea and S. invicta) differ at just 47 (2.1%) of their nucleotides.
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