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As in C. albicans, (i) most units (11/12) start with PPH, (ii) the most common repeats are PPHE and PPHH and (iii) the last unit is PPHD (Fig.5).
Retrotransposons and retrotransposon-like elements (RTE), such as retroposons, are the most common repeats.
Tri- and hexa-nucleotide repeats have been shown to be the most common repeats in eukaryotic coding regions [ 20, 27].
In contrast, di-nucleotides were the most common repeats in the genomic sequences of the four species and AT/AT was the most dominant repeat.
Among tri-nucleotide repeats, the frequencies of 20 SSR types seem to vary moderately from 0.19 to 17.11%, and the most common repeats are (GTT) n (17.11%) and (ACC) n (10.14%) (Supplementary Table S2).
These results indicate that at 0.4× genome coverage, only an initial characterization of the most common repeats present in a plant genome can be made, while an estimation of the overall repeat content of the genome requires deeper coverage.
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"The way I understand AI, machine learning and big data is that it works well at distilling large amounts of data into the most common, repeating patterns.
Trinucleotide (46.9%) was the most common repeat unit followed by the di (19.7%), pentanucleotides (15.1%), hexa (8.9%), and tetra (6.5%).
Trinucleotide was the most common repeat unit with a frequency of 75.06% and 75.97%, followed by the di (10.43%; 9.62%), hexa (6.02%; 6.17%) and pentanucleotide repeats (3.63%;3.29%) in Saengryeg 211and Saengryeg 213, respectively.
Sequence variants analyses identified a total of 3,766 and 2,431 potential (Simple Sequence Repeat) SSR motifs for microsatellite analysis for both varieties, where trinucleotide was the most common repeat unit (84%), followed by di (9.9%), hexa (4.1%) and pentanucleotide repeats (2.1%).
In Caucasian populations, the most common repeat allele is the 4-repeat allele followed by the 7-repeat allele and 2-repeat allele.
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