Sentence examples for most common codons from inspiring English sources

A value of −100% represents a sequence window encoded using only the most rare codons, while a value of 100% represents a sequence encoded using only the most common codons.

To generate the longer pipo 70 allele, we used the site-directed mutagenesis primers T3141G-PIPO65-2-S (5′-GGGGCAAGCAATGTGTGAAAAACGTACACTCTAG-3′) and T3141G-PIPO65-2-AS (5′-CtoGAGTGTACGTTTTTCACACATTGCTTGCCCC-3′) to replace stop codons at positions 61 and 65 by the most common codons among all the TuMV isolates, which at the same time only introduced synonymous mutations in the P3 ORF.

After adjusting for potential confounding, the most common codon 336 405 haplotype DKPISENK was over-represented among severe malaria cases (40%, 41/102) compared with mild malaria controls (30%, 69/231), with an OR of 1.68 (95% CI, 1.01 2.81; P = 0.047 compared with other haplotypes combined).

Frequencies shown in bold indicate the most common codon (where synonymous codons exist for that amino acid or termination).

In contrast to flies, glutamine repeats are only the seventh most common codon repeat in mammals and sixth most common in chickens [ 28].

These results are consistent with previous studies [ 28, 44, 45], which have found that glutamine repeats were the most common codon repeat in Drosophila.

The canonical stop codon UAA is indeed the most common codon for glutamine in our dataset (Table 2), as expected in a G+C poor genome if the codon usage is close to mutational equilibrium [ 72, 73].

Among plants studied in detail, the most common codon repeats are those for Lys in Arabidopsis or Arg in sugarcane [ 31], both of which are hydrophilic and positively charged amino acids.

%MinMax defines the relationship between a given mRNA sequence and hypothetical sequences encoding the same protein using the most rare (minimum) or most common (maximum) codons, as a function of the arithmetic mean of all possible codon usage frequencies.

KRAS mutant polyps showed three different types of mutations with the same frequency within the two most common hotspot codons (12 and 13): G12D (33.3% – 2/6), G12V (33.3% – 2/6) and G13D (33.3% – 2/6).

RIF and RFB resistances are not invariably cross-resistant although the most common mutations (codons 526 and 531) are reported to result in high-level resistance to both drugs.