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Our study was designed to seek a robust answer to the question of which similarity approach would generate the most coherent clusters of a biomedical literature set of over two million documents.
This makes sure that the largest and most coherent clusters of TFBS are formed.
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PubMed's own related article approach (PMRA) generated the most coherent and most concentrated cluster solution of the nine text-based similarity approaches tested, followed closely by the BM25 approach using titles and abstracts.
Studying patterns of clustering in these programs reveals that most programs contain multiple substantial coherent clusters.
For example, it would still be a matter of dispute whether there are mental representations and whether they can do the sorts of explanatory work that proponents of RTM require of them or whether these explanatory roles provide the most important or coherent cluster of roles associated with the term "concept".
With hierarchic clustering, similar gene clusters emerged, with cluster II and IV being most coherent and upregulated.
This measure can be used as a quantitative indicator of the coherence of a collection of clusters - larger values represent clusterings containing clearly separated, coherent clusters.
The most coherent eigenvalues (light blue) have a coherence of ~1.
Their morphological expression varies from isolated elliptical features to coherent clusters or strings.
The most coherent conservative case against health-care reform.
This is essentially a clustering task; to look at the network formed by the entire set of articles and work out how to divide it into coherent clusters.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com