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Among other UPF0201 proteins homologs in the PDB 10077c was identified by DALI as similar to NikR from H. pylori [56] (HpNikR: PDB ID 2CAJ, Z-score = 4.2, Sequence Identity = 4%, r.m.s.d. = 2.9 Å for 68 equivalent Cα pairs), and 10077d most closely resembles NIKR from E.coli [57] (EcNikR: PDB ID 2BJ1, Z-score = 2.2, Sequence Identity = 6%, r.m.s.d. = 3.8 Å for 66 equivalent Cα pairs).
The configuration of the equivalent loop in Ef DHFR most closely aligns with the occluded form, which for Es. coli was attained by including an oxidized NADPH and an empty substrate pocket (i.e., PDB entry 1RX9).
The Smith-Waterman algorithm computes an optimal local alignment, meaning that the NS measure of similarity between two proteins is equivalent to the similarity between their most closely related pair of domains or regions.
Similarities exist in stretches that adhere most closely to the HEAT repeat theme but the overall architecture has no known equivalent.
The N-terminal Kunitz module is most closely related to the second TFPI domain [6] (r.m.s.d. of 0.57 Å for 56 equivalent Cα atoms).
Given graphs G S = V, E S ) and G NC = V, E NC ) of equivalent total density (| E S |=| E NC |), the graph with the highest component density most closely approximates a transitive graph.
The company most closely resembles Amazon.com.
Batch is being watched most closely.
What stadium most closely resembles the Marlins'?
The music "Juha" resembles most closely is that of Janacek.
Mentions the artists most closely associated with it.
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