Suggestions(4)
Exact(3)
Fig. 4 shows the effect of collaterality for G4 and G5 in the case of the most abundant patterns.
In what follows, we focus on the six patterns that are the most abundant in all cases: egalitarian triads (300), dyadic leaders (201) and single dyads (102), which are the most abundant ones, and triadic leader (210) and collateral and broker dyads (120D and 120U), which are three next most abundant patterns.
In the eukaryotic Swiss-Prot set, the eight most abundant patterns (all with more than 1300 occurrences) are not associated with any known sequence features.
Similar(57)
The most abundant pattern (first column) represents all sampled protein pairs that no method considers to be orthologs.
The most abundant pattern of LGT in eukaryotes is the transfer of genes from the bacterial ancestors of the modern mitochondrion and plastid to the cell nucleus during the process of organelle genome reduction [ 11, 47, 53].
Among the observed repeats, the most abundant pattern was found to be stretches of mononucleotides (A/T) accounting for a total of 81 and 61 stretches of polyadenine (polyA) or polythymine (polyT) (A/T) followed by di-nucleotide patterns accounting for a total of 77 and 71 repetitive units in C. resedifolia and C. impatiens.
The most abundant pattern (with seven homologous clones) was annotated as group A. There were two clones in group B and three clones in both groups C and D. From the culture media, the secreted VHH pIII peptide products were assessed for initial sensitivity toward BDE-47.
Two examples of the most abundant peptide patterns in other kingdoms are YAEGY (270) and VMPQT (223), which are parts of serine hydroxymethyltransferase and translation initiation factor IF-2, respectively.
Up to the five most abundant isotope patterns with a charge ≥2 were subjected to collision-induced dissociation fragmentation at a normalized collision energy of 35, an isolation window of 2 Th and a resolution of 15,000 at m/z 200.
The two most abundant peptide patterns in the eukaryotic genome set, WWDHF (569 occurrences) and WCMRH (313), are not found in Swiss-Prot at all, and nearly all protein hits (except 6 and 14, respectively) are to a putative protein retrotransposon in Oryza sativa (rice).
Additionally, most of the edits appeared in a bi-allelic manner, and the most abundant editing pattern was one base pair insertion at 3 bp downstream of the complementary NGG PAM site (Fig. 5h).
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.
Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com