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The most abundant pattern (first column) represents all sampled protein pairs that no method considers to be orthologs.
The most abundant pattern of LGT in eukaryotes is the transfer of genes from the bacterial ancestors of the modern mitochondrion and plastid to the cell nucleus during the process of organelle genome reduction [ 11, 47, 53].
The most abundant pattern (with seven homologous clones) was annotated as group A. There were two clones in group B and three clones in both groups C and D. From the culture media, the secreted VHH pIII peptide products were assessed for initial sensitivity toward BDE-47.
Among the observed repeats, the most abundant pattern was found to be stretches of mononucleotides (A/T) accounting for a total of 81 and 61 stretches of polyadenine (polyA) or polythymine (polyT) (A/T) followed by di-nucleotide patterns accounting for a total of 77 and 71 repetitive units in C. resedifolia and C. impatiens.
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Fig. 4 shows the effect of collaterality for G4 and G5 in the case of the most abundant patterns.
In what follows, we focus on the six patterns that are the most abundant in all cases: egalitarian triads (300), dyadic leaders (201) and single dyads (102), which are the most abundant ones, and triadic leader (210) and collateral and broker dyads (120D and 120U), which are three next most abundant patterns.
In the eukaryotic Swiss-Prot set, the eight most abundant patterns (all with more than 1300 occurrences) are not associated with any known sequence features.
Additionally, most of the edits appeared in a bi-allelic manner, and the most abundant editing pattern was one base pair insertion at 3 bp downstream of the complementary NGG PAM site (Fig. 5h).
*Bold letters signify the most abundant simple pattern with the complex one, as shown by silver staining.
We confirm that the most abundant firing pattern is continuous adapting (∼75%) as Karagiannis et al. (2009) showed.
However, the most abundant peptide pattern WCGPC (599 occurrences), which is found in almost all bacterial species in the genome data set, has the features "disulfide" and "active site" and is found in thioredoxins [ 13].
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