Exact(1)
By illustrating graph connections and node coverage, Bandage made it clear which path represents the gene's most abundant copy.
Similar(59)
However, after following revised wobble rules for eukaryotic genomes, we obtained 17 codons in housekeeping genes that correspond to most abundant tRNA copy number, whereas in tissue-specific class, we observed only eight preferred codons that correspond to most abundant tRNA copy number (Table 3).
Similarly, in tissue-specific rice genes, there are 16 preferred codons that correspond to most abundant tRNA copy number.
ckPTHrP 1-141 ckPTHrP 1-141PTHrP(1-141) 5utrB were the most andndant transckPTHrP 1-141 ckPTHrP 1-141e to 18S) and were mainly found in cartilage.
Same analysis was performed in Arabidopsis and it has been observed that in housekeeping genes, there are 10 codons that correspond to most abundant tRNA copy number, whereas in tissue-specific genes, there are only five codons that show perfect match with most abundant tRNA copy number (Table 3).
Furthermore, according to Najafabadi et al. frequencies of codons in highly expressed genes that correspond to most abundant tRNA copy number may have been under selection pressure for error minimization.
It is reasonable to assume from our results that frequencies of codons in highly expressed genes that correspond to most abundant tRNA copy number may not be under selection pressure for error minimization.
The SuperSmart cDNA Synthesis Kit (Clontech, CA) was used to synthesize cDNA, and the library was normalized using the Trimmer kit (Evrogen, Moscow) that reduces the quantity of the most abundant cDNA copies.
Comeron [ 25] showed that in the human genome, in the majority of amino acids with degeneracy greater than one, the codons with the most abundant tRNA gene copy numbers exhibit an increase in frequency in highly expressed genes compared to lowly expressed genes.
Sample CN-SH-TS has the most abundant AOB amoA gene copy numbers among the eight activated sludge samples tested.
All the classes of TEs found in Eukaryotes are also present in plant genomes, but LTR retrotransposons are the most abundant in terms of copy number and percentage of genome [ 4]. 95% of maize TEs are LTR retrotransposons [ 5].
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