Sentence examples for most abundant annotated from inspiring English sources

Following Blast2GO annotation we identified the top 10 most abundant annotated transcripts within the reproductive and non-reproductive SE.

Finally, 41 An. albimanus transcripts were annotated as Protein of Unknown Function DUF227 (IPR004119), which ranked among the top 20 most abundant annotated transcripts, whereas in An. gambiae this classification was ranked in the 69th place with 43 annotated proteins.

In the mantle, NADH dehydrogenase subunit 4 homologues constituted 5 of the top 10 most abundant annotated transcripts.

Overall, the most abundant annotated transcript was NADH dehydrogenase subunit 4, which comprised 1190 reads (0.7% of total reads) (Fig. 1).

In the foot, 5 of the top 10 most abundant annotated transcripts were homologues of foot proteins identified from M. californianus and M. galloprovincialis datasets, specifically adhesive plaque matrix proteins, which constituted 477 reads (1.5% of total).

Our analysis revealed that, apart from house-keeping genes, most abundant annotated transcripts were directly related to adaptation to the challenging physico-chemical conditions encountered by A. pompejana, in particular hypoxia, oxidative stress and heavy metals.

The contribution cutoff was 10% to highlight the most abundant species annotating onto a specific miRNA locus, as previously shown [ 22].

The most abundant transcription factor family annotated to A. thaliana was WRKY (WRKY DNA-binding domain), with 218 unique sequences, whereas for P. trichocarpa, it was C3H (Cys4-His-Cys3 zinc finger), with 158 unique sequences.

A range of proteins considered to be ubiquitous in cellular processes also ranked among the most abundant sequences that could be annotated.

This is supported by the annotation of the dominant pORF clusters (with >10 non-redundant sequences, Table 3) and Fig. 2. The most abundant sequence that could be annotated was PF02407, Putative Viral Replication Protein, and the second most abundant was PF00910, RNA helicase, which is thought to be involved in viral infection (Table 3).

We also annotated the most abundant full-length nontoxin transcripts for the three assemblies based on 20 million reads.