Second, and more importantly, we report taxonomic accuracy, which was calculated as the number of perfect clusters (i.e., clusters containing all sequences of a morphology based species and only those sequences) relative to the number of species in the dataset.
Fungal phylogenies based on rDNA sequences are broadly in accord with morphology-based taxonomic concepts for Ascomycota and Basidiomycota, but are inconsistent with them for the earliest fungal lineages, namely the Zygomycota and Chytridiomycota [ 9, 17- 23].
The first traditional morphology-based taxonomic studies of Asian Corbicula described approximately 200 species [ 26- 28].
Morphology-based taxonomic studies have recorded Cortinarius species displaying calochroid and fulvoid features from several coniferous and frondose forests in North America [ 17, 18] and Nothofagus forests in South America [ 19, 20].
This may suggest that cryptic species are less frequent in flowering plants because the morphology-based taxonomic system is highly reliable; however, there have been too few empirical studies to make conclusive inferences regarding the prevalence of cryptic species within flowering plants.
The comprehensive and highly detailed morphology-based taxonomic works available for the Muscidae (see Methods for complete list) have allowed us to complete an in-depth assessment of congruence levels between molecular and morphological species limits in northern muscid flies and to evaluate the identification success rates of threshold and cluster-based methods.
He also designed a prototype taxonomic database system called HICLAS (hierarchical classification system) based on taxonomic onotology (Zhong et al., 1999).
Supplementary Table S1 Breakdown of genes based on taxonomic assignment.
Most authors have based their taxonomic discussions on trichome morphology (Freire et al. 2005, 2007; Adedeji and Jewoola 2008; Gil et al. 2012; Redonda-Martínez et al. 2016).
Secondly, a taxonomic dissimilarity measure based on the taxonomic distinctness concept, that incorporates relative relatedness of species and avoids aggregating to higher taxonomic levels, was employed.
An inner- to middle homoclinal ramp morphology is reconstructed based on facies distributions and taxonomic and coralline algal growth-form proxy data.
