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MAS breeding for target wild alleles at Hort5-3 simultaneously with background selection against wild alleles at Hort5-4 in segregating progeny populations from crosses between these donor lines and other cultivated tomato lines would eliminate the negative effects of wild alleles at Hort5-4, producing more useful breeding lines.
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Therefore, we believe that the Yumeaoba allele of DRO5 would be more useful for breeding for deep rooting than the Kinandang Patong allele.
QTL that are stable over multiple environments are more useful in breeding programs because they might contribute to a consistent phenotype under changing conditions.
The pyramiding of Bph3 and Bph27 t) will provide more useful material for breeding durable BPH resistant cultivars.
Due to the latter two properties, quantitative resistances are today considered more useful in a breeding context than qualitative resistances.
Codominant SNP assays should be more useful in cotton breeding programs where it is essential to be able to identify individuals carrying all the homozygous alleles of interest in segregating populations.
Therefore, further transcriptome sequencing of a broader array of germplasm, including diverse elite breeding genotypes, could identify SNPs that would be more useful in modern alfalfa breeding programs.
A codominant SNP assay will be more useful in genetic mapping and breeding programs that frequently deal with segregating populations, such as F2 and backcross populations.
In cultivars or breeding lines it will be more useful to estimate the proportion of a genome that harbors linkage drag.
Gene-based markers are more useful in mapping of quantitative trait loci (QTL), molecular breeding, and gene cloning.
Functional validation of CT related genes identified in this study, however, is still required to provide more useful information for CT improvement in japonica rice molecular breeding.
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