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Although more transcripts for primary metabolism were regulated in Ms larvae, they regulated only specific pathways, while Hv larvae regulated transcripts for all primary metabolic pathways.

For example, Ms larvae that fed on JA-silenced plants regulated 2 times more transcripts for carbohydrate and amino acid metabolism, and 4 times more transcripts for carbohydrate metabolism than larvae that fed on N/PI- and N-silenced plants, respectively (Figure 3A, upper panel).

Ms larvae that fed on JA-silenced plants also regulated 3 5 times more transcripts for peptidases than did larvae that fed on N/PI- and N-silenced plants, respectively (Figure 4A, inset, upper panel).

Ms and Hv larvae that fed on JA-silenced plants regulated 3 and 1.4 times more transcripts for primary metabolism than larvae that fed on N- and N/PI-silenced plants, respectively.

However, Hv larvae regulated more transcripts for transporters when they fed on N-silenced plants (1.3 times more) than when they fed on N/PI- and JA-silenced plants (Figure 5, lower panel).

Ms larvae regulated 1.4 times more transcripts for protein targeting and degradation when they fed on JA-silenced plants than did Hv larvae that fed on these plants (Figure 6, upper and lower panels).

SGFRm and SGFRs libraries contain significantly (P = 0.006 and P = 0.003, respectively; χ2 test) more transcripts coding for all types of GRPs than the SGFAc library; transcripts for GRPs were equally represented in the SGFRm and SGFRs libraries (P = 0.821, χ2 test).

On the other hand, Hv larvae regulated more transcripts coding for genetic information processing (12%), followed by cellular processes (7%) and environmental information processing (6%) compared to Ms larvae (6%, 6% and 5%, respectively) (Figure 2B).

By sequencing these differentially regulated transcripts and mapping them to biochemical pathways, we discovered that Ms larvae that fed on defenseless plants regulated more transcripts coding for enzymes (21%), followed by transporters (11%) and metabolism (21%) compared to Hv larvae that fed on these defenseless plants (9%, 4% and 19%, respectively).

In this study, we found that there are more transcripts or genes for P450s, COEs and ATPases in H. assulta than in H. armigera.

The results show that there is much more transcript evidence for the Detected set than for the Not Detected and Potential NC genes (Fig.  3)—the more tissues in which a transcript was expressed, the more likely we were to detect peptides.