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Y1 uses the most sensitive YAHA parameters possible for a 15/1 index, and produces more total alignments, more GE50U alignments and more queries with a greater number of GE50U alignments, in less runtime than MegaBLAST.
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In addition, all of the YAHA runs produce significantly more total and GE50U alignments per second than any other aligner runs.
Even if they have more total viewers.
The total alignments for rbcL, matK and ITS2 alignments were concatenated into a profiled alignment with SequenceMatrix 1.5 alpha9 [ 58].
Identification of M regions is performed after discarding the unique alignments from total alignments.
His premiership will be remembered for a focus on fundamental values – whether the assault on what he then saw as an unsound dominance by the political left in Danish culture and media, the government's reliance on the ever more popular and controversial Danish People's Party (DPP) as backers or his total alignment with George Bush's war on terror.
Pickard replied that there was "total alignment with the international oil companies at every level".
She said there was "total alignment" among the IOCs and with the Nigerian oil companies.
The truth is, Jesus was in total alignment with the Father.
Charles is committed to his mission and through his words and actions he clearly demonstrates that there is total alignment of who he is and what he does.
Through masterful coaching and strategy sessions, she helps entrepreneurs whip their businesses into money making powerhouses, in TOTAL alignment with their unique passions.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com