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The inferences reported in this study are drawn from a single pair of generalist and specialist herbivores and will need to be verified in additional comparisons, preferably ones sharing a more similar evolutionary history.
Neutral links representing protein-protein interactions within protein complexes in the signaling network tend to have more similar evolutionary rates and might be more co-evolved.
Presumably, M1 genes evidencing closer −ln L scores and divergence distances, based on the comparison with the selected homolog sequences, may share more similar evolutionary histories.
These observations agree with previous results providing evidence that yeast proteins belonging to the same functional module tend to have more similar evolutionary rates than those belonging to different modules [ 70].
Nonetheless, both hypothetic mechanisms would lead to a set of similar predictions: first, the genes of positive selection would cluster closer to each other in the PPI network than predicted under null hypothesis; second, the clustered genes of selection may share more similar evolutionary paths than genes unrelated on the PPI network.
Fast evolving signaling proteins have two modes of evolution: immunological proteins evolve more independently, while apoptotic proteins tend to form network components with other signaling proteins and share more similar evolutionary rates, possibly enhancing rapid information exchange between apoptotic and other signaling pathways.
Similar(54)
These nontransposon related roles are expected to apply different evolutionary pressure to some piRNAs, perhaps more similar to the evolutionary properties of microRNAs [ 88].
Because our dataset comprised protein-coding genes and rRNA, we performed partitioned analyses implementing separate nucleotide substitution models for subsets of the data more likely to have experienced similar evolutionary processes (mitochondrial genes, EF and rRNA stems and loops).
Although more limited in scope, a surprisingly similar evolutionary pattern was predicted for the SKP1-binding partners of FBX proteins in A. thaliana and O. sativa.
They also found that the genomic distribution of cellular functions tends to be more similar in organisms that have higher evolutionary proximity.
The genes of the sequenced percomorph species (medaka, tilapia, stickleback, and fugu and green spotted puffer) were more similar and formed a cluster whose evolutionary relationships could not be unambiguously defined solely using bassoon and piccolo sequences.
Related(20)
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