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Although cell cycle control is an ancient, conserved, and essential process, some core animal and fungal cell cycle regulators share no more sequence identity than non-homologous proteins.
It is useful to note here that the AluY subfamily is younger and, therefore, its members tend to have more sequence identity with one another, relative to the AluJ subfamily.
In comparison with the α-subunit of FTase among L. major, L. infantum and L. donovani the β-subunit showed more sequence identity (Additional file 1: Figure S2).
Because each UniRef50 entry contains sequences sharing 50% or more sequence identity, the program is very quick, and the resulting alignment approximates to an alignment of orthologues.
Under standard conditions [ 31, 61], hybridization to the microarray spots will generally occur between DNA molecules with 75% or more sequence identity.
Sequence analysis revealed that the SSR-containing genes span a diversity of functions and share more sequence identity with strawberry genes than with other Rosaceous species.
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HIF-1αB and HIF-2αB shared more sequence identities with human HIF-1α and HIF-2α than HIF-1αA and HIF-2αA did in all species except Gd. pachycheilus.
We retained the alignments that co-localized 2 or more different centromeric-specific sequences (pSat107 and any of CentSp), with a coverage of 80% or more and sequence identity of 80% or more.
This result suggests that protein structure relies more on sequence identity than topology.
The segmental duplication track identifies duplications of 1 kb or greater that share 90% or more DNA sequence identity [ 32].
Whereas redundancy removal caused by substrings and repeated sequences is essential, introduction of a more stringent sequence identity threshold is not.
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