after all tasks are completed, the wrapper will zip output files (specified by one or more regular expressions) into a zip file with the given name.
The first field stores one or more Java regular expression (without any slashes or anything around them) separated by non-tab whitespace.
These signatures describe the target domain using either a string descriptor or a more flexible regular expression field.
Complex motif definitions also make it challenging to identify whether a prediction method is returning the correct motif from a given dataset; the more degenerate a regular expression is, the more likely it is to get a match using CompariMotif (Edwards et al., 2008) or manual comparisons.
Meanwhile, as the price of hardware resources decreases and more complex regular expressions are used, AC algorithm will have more applications.
For many programmers, the notion of "pattern matching" evokes nothing more than regular expressions for matching unstructured text, or technologies such as XPath to match semi-structured data in XML.
The first three types could be annotated using more general regular expressions, while a dictionary approach might be suitable for the terms describing the mutation types.
This means that the combination of the regular expression-based approach and our probabilistic method will help reduce expensive and laborious wet-lab experiments more than the regular expression method alone will do to exhaustively analyze a given set of G4 motifs of interest.
(You can find out more about grep's regular expression grammar by typing "man grep" in the UNIX console).
The CxxxxR motif does exhibit some conserved features, it can be summarised more precisely as a regular expression Cx[LIFM][DE][DE]R, where square brackets indicate alternative residues at a position.
