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One possible explanation for this high rate of retention is that the duplicate genes we analysed tend to be derived from more recent duplication events.
This result suggested a more recent duplication of isoforms within zebrafish.
Our findings suggest that a more recent duplication gave rise to the PGAM1 and PGAM2 copies.
More recent duplication events have increased the number up to ten in some lineages.
In contrast, the gene tree suggests that GSMUA_Achr9G22510_001 and GSMUA_Achr4G06050_001 are the result of a more recent duplication.
As we mentioned above, more recent duplication genes are rich in Group I than those in Group II and III.
Similar(20)
The tree does not support the hypothesis that multiple var2csa type genes are the result of recent duplication events in most isolates, although the HB3 and 1627 sequences are quite closely related and could represent relatively more recent duplications.
Furthermore, the tree suggests the existence of deviating lineages such as the MIB6 of the B35 serotype but also of more recent duplications of MIB6 loci, as shown for serotypes B29 and B32.
A more recent duplication-recombination event of the GRX domain is present in TRX-GRX-GRX-GRX proteins found in plants and in some protists.
While the conserved gene characteristics suggest more recent duplications, the dissimilarity suggests either more distant duplication events or translocation events.
The phylogenetic analysis of 157 gene families indicated a large imbalance in favour of ancient duplications predating the GA split versus more recent duplications postdating the GA split.
More suggestions(15)
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com