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Clusters are selected randomly, but more recent clusters are given priority over less recent ones.
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In the following, we present more recent clustering validation measures.
Clusters 5 and 7 have similar gene content (three TRMD segments) and share greater nucleotide sequence identity to cluster 3 and represent more recent whole cluster duplications that would have followed the duplication of an additional D segment in this lineage [ 14].
Min-cut [ 16] and a more recent spectral clustering algorithm [ 17] consider not only the within-cluster density but also inter-cluster distance.
The more recent S cluster genetic drift probably results of processes that occurred over the last centuries (habitat fragmentation, diseases).
To date, 29 YFV strains from Pará dating from 1969 through 1999 have been examined; none of these more recent strains cluster with the earlier clade.
On the other hand, more recent infections within clusters can be explained by the process of cluster identification.
Other cluster duplications are of more recent origin, as cluster members from the same species are grouped in the same branch, as can be clearly seen in species with many clusters, i.e. L. plantarum, L. sakei, E. faecalis and L. lactis.
Most booths with smaller objects — carved jade, jewelry, tiny statues — and pieces of more recent vintage are clustered along the perimeters.
A more recent summary reviewed cluster methods applied in epidemiology for point data and identified that the K-function is the most commonly used global method followed by methods based on the nearest neighbour statistics such as nearest neighbour index (NNI), nearest neighbour hierarchical (NnH) and Cuzick Edwards test (Fritz et al. 2013).
The more recent Lilliwaup samples clustered mainly in the center, supporting high genetic drift in this population.
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