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The use of PCP led to what can be called a more explorative behavior of subjects: On the one hand, they performed considerably more filtering steps and also reversed their settings more often.
Users of PCP performed significantly more filtering steps (i.e., changes in aspiration levels) and backtracked significantly more often, but nevertheless managed to have fewer admissible solutions throughout the process.
After getting the results from that analysis, two more filtering steps were applied: genes with an intron shorter than the found cutoff were skipped, as were genes with introns that did not conform to the splice site consensus "gt...ag".
We expect DMs provided with either heatmaps or PCP to strongly oscillate the number of admissible portfolios over time by performing more filtering steps reducing as well as increasing the number of admissible portfolios.
Each filtering procedure is composed of one or more filtering steps that require distinct data to be computed (some of them can be calculated only for aligned sequences, for instance) and are executed when appropriated data types are available (Fig. 1, filtering procedures shown as grey boxes).
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The raw data were refined using two filtering steps: (1) Contaminant filtering: adapter sequences may be introduced into raw reads during the library construction process.
Pipes connect the machine to a floating dock outside, where more filtering experiments take place.
The genomic loci corresponding to sequences remaining after these filtering steps were then analyzed for the hairpin secondary structure that is characteristic of miRNA precursors.
After these filtering steps, we retained 8154 SNPs associated with 2280 genes for ASE analysis.
After these filtering steps, we identified 556 InDels in the mdf-1 such-4; dog-1F470 genome.
Each dataset passed two filtering steps, therefore p-values were not corrected for multiple testing.
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