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After the analysis of a more extensive alignment, the most informative Swissprot hits were selected.
The kinase aficionados would probably appreciate a more extensive alignment.
If so, a more extensive alignment of the amino-acid sequences would be needed to assess the homology inferences at each of the intron-containing sites.
Additional File 1: Provides an updated tree showing the relationship of the ATP grasp modules, a more extensive alignment of the R2K clade, its phyletic distribution, and its gene neighborhoods.
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Author's response : This section has been revised and much more extensive alignments are presented and phylogenetic analysis performed.
Chapter 5 provides descriptions of more extensive and advanced alignment algorithms for more exact similarity detection, such as Deterministic finite-state automata (DFAs), the Needleman-Wunsch algorithm, and the Smith-Waterman algorithm.
The CNH-Col groups tended to form syncytium with a more homogeneous alignment, more extensive sarcomeric structures along the cell longitude, and better cross-striation compared with the collagen group.
To this extent, we have analysed coevolution patterns in an extensive alignment of more than 6000 non-identical Influenza A neuraminidases to eventually identify connected networks of residues using the SCA algorithm [ 38] as implemented in [ 39], but no network that would connect the surface directly to the core and catalytic site was found (see supplementary material).
This comparison is expected to facilitate future alignment of more extensive DNA sequences generated in Chinook salmon using advanced technologies with those produced in rainbow trout and Atlantic salmon.
While it is clear that metabolic profiling would benefit from more extensive use of 2D NMR spectra, preprocessing methods such as signal alignment and visualization tools for multiple 2D spectra have lagged behind similar methods for 1D spectra.
The alignment between the rainbow trout and Chinook salmon SDR is much more extensive, and it is likely that the size and shape of the SDR may differ in each pairwise comparison within the genus.
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