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In addition, PSO algorithm has been tested in document clustering and more compact clusters has been generated by hybridizing PSO algorithm with k-means comparing to the use of k-means algorithm alone [20].
The more compact clusters and colony forming epithelial cells showed a typical hepatocyte-like phenotype.
Even more compact clusters (in terms of both localization and function) are cluster 6, with 25 of the 32 subunits of the proteasome (out of 34 genes of the cluster), and cluster 5, which contains all the respiratory chain complexes (34 out of 36 genes of the cluster).
The σ Gaussian window function controls the scale of the clustering algorithm, with smaller scales having more compact clusters.
In both cell combinations, it was also observed that the majority of extravasated cells were present in clusters near vasculature, with the TβRII KO epithelia forming more compact clusters.
In contrast, vertebrates have multiple more compact clusters, with four being present in tetrapods (Hoxa, Hoxb, Hoxc and Hoxd [ 8]) as a result of two rounds of whole genome duplication at the base of the vertebrates.
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Figure 3 shows that all the heavy metal ions are reasonably classified at a frequency of 100 Hz. Figure 4 classifies As, Pb, Cu, Cd and Zn as forming a more compact cluster at 1 kHz, whereas the Co, Ni and Cr compactness of clusters is comparatively less as compared to the cluster formed at 100 Hz frequency.
They show an average proportion of peaks of 0.07 % and a more compact clustering pattern.
In contrast, overexpression of MIEF1 induced extensive mitochondrial elongation in most (∼90%) of the cells, with frequent mitochondrial tubular clusters with long tubules emanating from the perinuclear clusters or with a more compact cluster of mitochondria.
We found this method produced a more highly correlated clustering structure when compared to other methods leading to more compact sub-clusters (Additional file 1).
The model works well for both porous (Ballistic Cluster- Cluster Aggregates, BCCA) and more compact (Ballistic Particle-Cluster Aggregates, BPCA) particles.
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