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The data shown are averages of 3 or more biological replicates per concentration.
The second set of filters was applied at the protein level, retaining only those proteins that were present in 2 or more biological replicates.
For example, OxyR regulon members were concentrated in cluster 7, but were also part of clusters 5 and 8. Collecting samples more frequently, over a longer time series and with more biological replicates might generate tighter groupings.
Data analysis was performed on 3 or more biological replicates for each condition.
All the parasites have two or more biological replicates (Additional file 1).
Error bars represent standard error of three or more biological replicates.
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For all experiments, three or more independent biological replicates were performed.
For the physiological experiments, three or more independent biological replicates of each control and time-treated sample were performed.
The interactions detected by MICC are also more consistent between biological replicates.
Bis-Class yields methylation callings that are more consistent among biological replicates.
The average expression of more than two biological replicates for each sample was used for analysis.
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