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It signals a more ancient ancestor, one common to salamanders as well as lizards, horses, and humans.
An even more ancient ancestor, the ancestor of sharks, bony fishes, and tetrapods, also had fins with rays.
Option B. The actual annotation should be more ancient; in other words, the MRCA most likely inherited this function from a more ancient ancestor.
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A more ancient common ancestor, the ancestor of tetrapods and bony fishes, had only fin rays and fins.
That this change is found neither in Neandertals nor in a more ancient human ancestor called H. heidelbergensis suggests a shortened sphenoid is a defining trait of our species.
Subfunctionalization of a more ancient presumable ancestor(s) included modified DNA binding specificities and qualitative and quantitative expression differences.
A simpler explanation is that the PAML algorithm has a bias toward reconstructing shorter sequences and FastML to reconstructing longer sequences the more ancient the ancestor becomes.
Our phylogenetic analyses indicate a tendency for Australian B. pseudomallei isolates to be associated with a more ancient common ancestor compared to other isolates.
In case of Sd1/T1, Sd3/T3 and Sd8/T8 this is in agreement with the suggestion that also the more ancient common ancestor of tomato/bittersweet and eggplant (the ancestral Solanum) is likely to have had these arrangements [ 32].
All analyses including the Bayesian analysis show that the Australian isolates share a more ancient common ancestor than the Asian isolates, and both Maximum Parsimony and Neighbor-Joining analyses suggest that B. pseudomallei isolate 668 was the first isolate to diverge from the B. pseudomallei/B.
Autozygosity arising from more ancient common ancestors is more difficult to detect but may nevertheless be detectable as SNP chips become denser.
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CEO of Professional Science Editing for Scientists @ prosciediting.com