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In contrast, the elliptical boundary results show ~ 50%% more alignments than would be expected for random points within the elliptical field (Fig. 5b, the difference in vent-vent alignment frequency for the thick black line representing vents, and the grey lines representing significance bounds).
In addition, the following uniqueness criterion was imposed to make sure that the two best alignments were unambiguous: for a query with three or more alignments, the alignments ranking third or worse were compared with the second best alignment (constituting the "short" partner of the reconstructed transcript).
For inclusion in Tables S1 and 4 we applied an arbitrary maximum expect value of 10−4 and an arbitrary minimum of 70% identity at the nucleotide sequence level or two or more alignments to the same locus/function in different plant species.
By considering many more alignments, YAHA achieves greater accuracy.
This is impressive given that YAHA considers many more alignments.
However, RScan could detect more alignments when tuning the parameters.
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Meanwhile, people want a united Europe, more alignment, and look at the problems.
And so Steve Case in particular wanted me to know that we now had much more alignment.
Such consultations give Thornton Academy more alignment with feeder schools than is typical in many fully public systems.
"If we'd had this debate five years ago, there would have been different opinions, but there's more alignment now," he said.
I have found in talking with him, that there's a lot more alignment, philosophically and spiritually, than I ever thought that there was.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com