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Mechanistically, CAF-1 suppression led to a more accessible chromatin structure at enhancer elements early during reprogramming.
Chromatin of children transformed into a hyper-activated and more accessible chromatin state in response to maternal smoking, especially in regulatory regions of the genome, so called enhancer regions.
Importantly, in unexposed CAST/EiJ mice, which acquired relatively less 1,3-butadiene-induced DNA damage, we observed increased transcription and a more accessible chromatin landscape around genes involved in detoxification pathways.
It was suggested that cancer cells adopt a more accessible chromatin landscape, similar to ESCs.
It also, however, raises the question of how histone H3.3 may confer a more accessible chromatin environment.
During S phase, KDM4A demethylase activity counteracts HP1γ binding at heterochromatic regions, creating more accessible chromatin required for passage of the DNA replication machinery [ 174].
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Although a generally higher efficiency of CRISPR/Cas9-induced HDR (3.8 4.3%) was observed compared with TALEN-induced HDR (0.8 1.5%), conclusions cannot be made before the following possibilities are excluded: more accessible local chromatin structure or different donor sequences.
In UNG−/− cells, enrichment of γ-H2AX occurred more frequently in accessible chromatin; TSS, DNAse-hypersensitivity regions, and origins of replication tend to be nucleosome-depleted and more readily accessible to proteins.
For example, acetylation of N-terminal lysine residues generates a more open and accessible chromatin configuration [3] [5] and is associated with increased gene expression.
Transcriptional activation of Slc17a6 was stochastic and correlated with both reduced promoter DNA methylation and significant enrichment for H3K4me3, suggesting a more open and accessible chromatin conformation.
Together, these results indicate that different chromatin-remodeling complexes in the INO80 family perform different functions in DSB repair to make chromatin more accessible for repair and signaling factors via mechanisms of histone acetylation and nucleosome remodeling.
More suggestions(15)
more permissive chromatin
more extensive chromatin
more nuclear chromatin
more restrictive chromatin
more relaxed chromatin
more accessible holiday
more complex chromatin
more condensed chromatin
more dramatic chromatin
more accessible space
more soluble chromatin
more initial chromatin
more accessible animal
more peripheral chromatin
more compact chromatin
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