Sentence examples for molecules were constrained from inspiring English sources

Water molecules were constrained using SETTLE [103].

During the MD runs, the LINCS algorithm [44] was used in order to constrain the lengths of all bonds; the water molecules were constrained using the SETTLE algorithm [45].

The bond lengths and geometry of water molecules were constrained.

All lipid and protein bonds were constrained using the LINCS algorithm (21), and water molecules were constrained using the SETTLE algorithm (22), allowing a time step of 2 fs to be used.

The reason that humans cannot detect polarized light is that the photopigment molecules can take up all possible orientations within the disks of the rods and cones, unlike the microvilli of arthropods, in which the molecules are constrained to lie parallel to the microvillar axis.

Second, since the dipole moments of rhodopsin molecules are constrained within the plane of the disc membrane, the light capture by the cell is highly sensitive to the polarization of the impinging light [ 13– 16].

Hence, at this early stage of evolution of the prebiotic ecology, peptides and oligonucleotides (as well as other molecules) increased in abundance but the range of these molecules was constrained because they were either bound to the SUMIs or generated by reactions catalyzed by them.

The backbone of the residues of the receptor complex outside the 20 angstrom boundary from the inhibitor molecule were constrained in a fixed position allowing larger movement of the neighboring amino acids only.

In these analyses, the number of tRNAs in a group did not affect S. For example, S values for isoacceptor groups were not correlated to the number of tRNA molecules that were constrained (Figure 2C).

This served as the seed crystal while an additional 1049 water molecules below the seed were constrained in a 5 Å thick disordered layer to act as an ice barrier preventing downward ice growth, leaving a small wedge of mobile water between constrained layers as shown in Figure 3.

Although our findings revealed significant mechanistic insights of the in vivo TF target search process, these initial single molecule tracking (SMT) studies were constrained to investigate the average behavior of TF dynamics in single cells.