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All patients receiving the molecule were included in the analysis.
All the four independent C5H11 radicals of the iso-pentane molecule were included in the investigation, i.e., 2-methylbutyl, 3-methylbutyl, 1,2-dimethylpropyl and 1,1-dimethylpropyl.
Finally, for the corresponding background reaction, D105 and H300 were truncated to propionate and ethylimidazole, respectively (ensuring the same reacting atoms in both the enzymatic and background reactions), and ethylimidazole and the hydrolytic water molecule were included only in our model of the hydrolytic step of the reaction.
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Water molecule is included in HETATM but not regarded as a ligand.
Due to the down-modulation of the TCR-CD3 complex following activation by Ag, most probably the whole fraction of CD25+ T cells activated by the allogeneic HLA molecule is included in the TRBV6-9 subset.
Data for eSNaPD hits broken down by sample and molecule are included as Supplementary file 6. AD and KS OTU tables were analyzed for the presence of eSNaPD hits.
Our assembled M. franciscanus molecule was included as an additional reference sequence for obtaining putative mitochondrial reads for the de novo assembly for M. nudus, P. depressus and H. pulcherrimus.
During the homology modeling process, an iron-heme molecule was included and connected by creating a covalent bond between the heme's iron atom and the sulfur atom of conserved cysteine (Cys) with the propionates of the heme interacting with the side chains of Trp, Arg, and Arg.
Terpenes, terpenoids and phenylpropanoids molecules were included in the in vitro evaluation, and QSAR models using genetic algorithms were built to identify molecular and structural properties of biological interest.
In some cases (e.g., UO2-oxalate), an increasing number of H2O molecules were included in the model to assess the effects of explicit solvation on the predicted interatomic distances, vibrational frequencies, and NMR chemical shifts.
To be able to detect CTL responses induced by a DNA vaccine in experimental animals, additional epitopes, restricted by mouse and Macaque rhesus major histocompatibility complex (MHC) class I molecules, were included in the target immunogen.
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