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The conformational energy of the molecule in structure IIIa is marginally higher, and the conformation thus less stable, than that of the molecule in structure IIIb.
Lattice energy and molecular conformation energies were calculated for all molecules, and showed that the conformational energy of the molecule in structure IIIa (yellow) is marginally higher, and the conformation thus less stable, than that of the molecule in structure IIIb (red).
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Structure of the third receptor molecule observed in structure 1fg9 that is not considered to be biologically relevant [ 17] differs from the structures of two complexed receptors.
He adds that changing a single molecule in the structure of LSD can render it inert— and small alterations to the structure of morphine create an antidote to it.
Pbtl was used by Day et al. [42] as a model flexible molecule in a structure prediction study.
We recorded the initial positions selected by each method and calculated the distance from each initial position to the nearest real molecule in the structure in each dataset.
As discussed previously, the conformation of the nevirapine molecule in the structure slightly differs from the conformation of the free molecule by a decrease in the butterfly angle due to a C7 = O16..HC19 hydrogen bond.
The presence of one water molecule in the structure of the transition state considerably relief the ring strain and stabilize it considerably to lie at only 29.6 kcal/mol above the 1 form as shown in Fig. 2.
This was caused by fact that these two compounds differ only by one extra glucose molecule in the structure of RA.
A similar style of hydrogen bonding is portrayed by the adventitious water molecule in the structure of 3. Unfortunately, no anions co-crystallized with the receptor molecules under these conditions.
5) The authors propose that the SOS molecule in the structure (and presumably GAGs in cells; see model in Figure 6-figure supplement 2) bridges the interaction between Norrin and the Fz4CRD.
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