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Molecular sequence databases are fundamental resources for modern bioscientists.
Essentially Sol Rgene bridges the gap between well characterized plant material oriented databases and molecular sequence databases.
As molecular sequence databases became increasingly prevalent and used by researchers, additional databases were included in the curation workflow over the years.
The molecular sequence databases maintained by the National Center for Biotechnology Information (NCBI) [ 36] were searched in January 2014 for lysozyme g-like sequences.
Analysis of molecular sequence databases (Genbank and SwissProt) shows that three bacteria (Acinetobacter calcoaceticus,Ruminococcus albus, and Agrobacter tumefaciens) share sequences with the encephalitogenic peptide of bovine myelin, while three molecules in Escherichia coli show molecular mimicry with host-encoded prion protein.
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This initial taxonomic database consists of 8650 species (169 amphisbaenians, 5270 lizards, 3209 snakes, and 2 tuataras), against which the classification of species in the molecular sequence database was fixed.
The construction of this phylogeny is a major endeavor for biology and largely now depends on the unprecedented growth of molecular sequence data available in public databases.
Microorganisms present in catheter biofilms were identified by BLASTN [22] search of rDNA sequence databases and molecular-phylogenetic analysis.
For example, a paper published by the Babbitt group investigated the misannotation levels for molecular function in four public protein sequence databases for a set of 37 enzyme families for which extensive experimental information is available and concluded that the level of erroneous annotation was much higher in automatically annotated databases than in manually curated resources (2).
Two hundred and thirteen alleles from 51 different genes whose molecular sequence was known were selected randomly from the database.
The data obtained were compared with ovary/follicle/egg molecular phenotypes of other animals, published or available in public sequence databases.
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