Sentence examples for molecular replacement calculations from inspiring English sources

Molecular replacement calculations were performed using the program COMO [ 28].

To test how the inclusion of weak high-resolution data impacted the molecular replacement calculations, we conducted MR-Rosetta runs using these three justifiable resolution cutoffs.

In the first group, the model of FAD-dependent MdaB from Streptococcus mutans scores as the most similar structure (PDB code 3LCM; [ 24]) and was thus used as search model in molecular replacement calculations.

This involved first a rigid body refinement as part of the molecular replacement calculations, then iterative cycles of restrained refinement combining REFMAC5 [ 18] with electron and difference density map inspections, and model manipulations in COOT [ 19].

The crystal structure was solved by molecular replacement, with all calculations performed using the program Molrep [27].

The automated molecular replacement program BALBES calculated a number of molecular replacement models and output a potential solution utilizing 3RR1 (31% identical sequence) as the search model.

Calculations for Molecular Replacement and final refinements were performed using the Phenix 30) suite of programs.

Phases for hGBE1 were calculated by molecular replacement.

The structures of wild-type TbARG were determined by molecular replacement using the coordinates of Se-Met TbARG as a search probe for rotation and translation function calculations with PHASER implemented in the CCP4 suite.

Utilizing the maximum likelihood based molecular replacement program PHASER [3], MrGrid enables the user to retrieve and manage the results of tens to hundreds of MR calculations quickly and via a single web interface, as well as broadening the range of strategies that can be attempted, increasing the likelihood of success.

All ligand-complex structures were resolved by molecular replacement.