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Molecular models were generated using the program Modeller (version 9.7; [ 44]), considering the presence of heteroatoms (2 [Fe-S] cluster) if suitable.
All figures with molecular models were prepared using PyMOL (www.pymol.org).org
Main active sites and their molecular models were built.
Molecular models were generated by G.C. Confocal microscope and epifluorescence studies were carried out by J.M.B. and J.T.M. A.C.C., J.M.B., W.R.B. and B.L.F.
Molecular models were proposed based on STM images and reproduced with density-functional theory calculations.
In the second route (method B), the molecular models were built by considering carbon and hydrogen atoms.
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The MIT molecular models are designed to teach cell processes in addition to molecular structure.
In this approach molecular models are employed as refinement for calculating data required by the continuum solver.
Based on MVVM architectural pattern, the molecular models are two-way bound as ViewModel between the controllers and view.
The 32 bit color depth used by the program causes latencies when molecular models are manipulated over networks.
At the molecular level, the assembly disassembly mechanism is far from elucidated, and present assembly disassembly molecular models are highly speculative (see details in Craig et al, 2006).
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