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SciSamma 44 is a scientific workflow for structural approach and molecular modeling analyses (ie, homology modeling analyses) build on top of SciCumulus and deployed on Amazon Web Services.
In addition, Tm, CD, fluorescent resonance energy transfer assays, and molecular modeling analyses were carried out to define their structural activity relationships and possible mechanisms of action.
In this study, the catalytic mechanism of the enzyme PoAbf was elucidated and its nucleophile catalytic residue was investigated by bioinformatics and molecular modeling analyses.
These molecular modeling analyses should, in our view, contribute for further development of selective C. albicans secreted aspartyl protease inhibitors.
Molecular modeling analyses indicate that binding to an allosteric site by DBT, but not by the other organotins, alters the orientation of key residues in the ligand binding pocket of the GR.
Drawing on the extensive molecular modeling analyses of ubiquitin and our (28) recent measurement of the more rapidly exchanging ubiquitin amides by magnetization transfer-based techniques, we have carried out solvent isotope exchange measurements under similar conditions so as to provide a complementary set of exchange rate constants for the more slowly exchanging sites.
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Matthew Brook and Zhi-Liang Lu performed molecular modelling analyses.
We show by molecular modeling and analyses of RPGR disease-mutations that the RPGR-interacting domain (RID) of RPGRIP1 embraces multivalently the shared RHD of RPGR1 19 and RPGRORF15 isoforms and the mutations are non-overlapping with the interface found between RCC1 and Ran GTPase.
Molecular dynamics modeling analyses suggest that the increase in H209N thermostability may beattributed to a higher number of short helices and salt bridges, which displayed a positive charge in the catalytic core, stabilizing its tertiary structure.
This knowledge base provides the sequences, phylogenetic clustering, domain architectures of myosins and molecular models, structural analyses, and relevant literature of their coiled-coil domains.
Similar PHD finger-H3 tail-binding properties were recently reported for BRAF-histone deacetylase complex 80 and DNA methyltransferase 3L; sequence alignment, molecular modeling, and biochemical analyses showed these factors and Aire to have structure-function relationships in common.
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CEO of Professional Science Editing for Scientists @ prosciediting.com