Sentence examples for molecular functions based from inspiring English sources

A separate approach using the Gene Ontology scheme [ 27] categorized 39% of the ArboreaSet contigs into 16 molecular functions based on similarity with functionally annotated genes in other organisms (Table 3).

Contigs were assigned to 23 biological processes, 9 cell components and 14 molecular functions based on GO level II (Additional file 4: Figure S2A-C).

In this work, we propose a supervised machine-learning methodology to assess the accuracy of assigned molecular functions, based on simple topological properties of an organism's draft metabolic network.

The main genes that were activated following the exposure of pear leaves to salt were predominately involved in basic biological processes, biosynthesis of secondary metabolites, signal transduction mechanisms, and other cellular components and molecular functions (based on their matches in the COG, GO and KEGG databases).

The parametric analysis of gene set enrichment (PAGE) [ 27] detected enrichment in the 17 gene ontology (GO) terms, i.e. 8 biological processes, 3 cellular components, and 6 molecular functions based on the logFC between symbiont-bearing and symbiont-free cells with false discovery rates (FDR) < 0.05 (Table  1).

Annotations are grouped by biological process, cellular component and molecular function based on the Gene Ontology database (http://www.geneontology.org/ ).org/

While powerful software algorithms allow structural sequence similarity comparisons between species, difficulties arise to predict molecular function based on comparisons with homologous genes identified as determinant for a specific trait in different species.

Although the DEGs were classified into genes associated with biological processes, cellular components and molecular function based on gene ontology classification, transcriptomic changes reported here show upregulation of genes belonging to the canonical type I IFN signaling pathways together with a broad spectrum of antiviral genes that block virus replication in host cells.

To further characterize the subset of primary and secondary gastrin induced genes that were lower expressed in the transient mode, we annotated their molecular function based on Gene Ontology (GO) and literature and grouped them into five main categories: regulation of gene expression, signal transduction, transporters, protein binding and enzymes.

In addition, the regions were analyzed using Ingenuity Pathway Analysis (IPA; http://www.ingenuity.com/) to identify over-represented molecular and cellular functions based on the Fisher's Exact Test p-value < 0.01.

Lists of differentially expressed genes were assigned to Gene Ontology (GO) biological processes and molecular functions classes based on fruit fly annotations.