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Of particular interest was the observation of a number of different molecular functions associated with remodeling of the cytomatrix.
Exploring the molecular functions associated to these gene products using The Gene Ontology, GeneCards and GeneNote data bases, we found associations to several biological processes (Figure 3).
This analysis identified five partially overlapping networks (Table 4) in our list of differentially expressed genes, highlighting similar molecular functions associated with the corresponding networks.
The molecular functions associated with B. cinerea infecting S. lycopersicoides are consistent with the biological processes.
Catalytic activity and binding activity were the primary molecular functions associated with BDTPs.
The top 10 biological processes and molecular functions associated with the differential transcripts included the metabolic process, the macromolecule metabolic process, nucleotide binding, and heterocyclic compound binding.
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b Molecular function associated with the functional domain.
A total of 539 GO functions in Biological Process, 171 functions in Cellular Component, and 1,549 functions in Molecular Function associated to the B. braunii 779 transcriptome (for a complete list of EST-associated GO functions, see Additional file 2: Table S2).
Gene Ontology (GO) [ 82] analysis was done to identify the biological processes and the molecular function associated with the identified proteins.
The mutant phenotype of C05C8.6 points to its involvement in embryonic and larval development with a molecular function associated with protein binding.
The result of this GO analysis shows that a broad array of biological process and molecular function associated products are represented by the DEGs identified through our pair-wise comparisons.
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